HL_7ZJW_002
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUUCAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_002 not in the Motif Atlas
- Geometric match to HL_4YCO_002
- Geometric discrepancy: 0.1589
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7ZJW|1|F|G|33
7ZJW|1|F|C|34
7ZJW|1|F|U|35
7ZJW|1|F|U|36
7ZJW|1|F|C|37
7ZJW|1|F|A|38
7ZJW|1|F|A|39
7ZJW|1|F|A|40
7ZJW|1|F|C|41
Current chains
- Chain F
- human Ser-tRNA-Sec
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SD
- 40S ribosomal protein S27a
- Chain Sa
- 40S ribosomal protein uS19
- Chain Si
- 40S ribosomal protein S23
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