HL_7ZJW_004
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCAAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_004 not in the Motif Atlas
- Geometric match to HL_4X4V_001
- Geometric discrepancy: 0.1564
- The information below is about HL_4X4V_001
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7ZJW|1|F|G|66
7ZJW|1|F|U|67
7ZJW|1|F|U|68
7ZJW|1|F|C|69
7ZJW|1|F|A|70
7ZJW|1|F|A|71
7ZJW|1|F|U|72
7ZJW|1|F|U|73
7ZJW|1|F|C|74
Current chains
- Chain F
- human Ser-tRNA-Sec
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: