HL_7ZJW_011

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGUG

Length

7 nucleotides

Bulged bases

7ZJW|1|L5|G|134, 7ZJW|1|L5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_011 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.1583

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7ZJW|1|L5|C|131
7ZJW|1|L5|G|132
7ZJW|1|L5|C|133
7ZJW|1|L5|G|134
7ZJW|1|L5|G|135
7ZJW|1|L5|U|136
7ZJW|1|L5|G|137

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LQ

60S ribosomal protein L15

Chain Lk

60S ribosomal protein uL29

Chain Lm

60S ribosomal protein L37