HL_7ZJW_020

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCGC

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|C|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_020 not in the Motif Atlas

Geometric match to HL_4PDB_001

Geometric discrepancy: 0.2549

The information below is about HL_4PDB_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7ZJW|1|L5|G|773
7ZJW|1|L5|U|774
7ZJW|1|L5|C|775
7ZJW|1|L5|C|776
7ZJW|1|L5|G|777
7ZJW|1|L5|C|778

Current chains

Chain L5

28S rRNA

Nearby chains