HL_7ZJW_021

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_021 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.3935

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7ZJW|1|L5|C|862
7ZJW|1|L5|G|863
7ZJW|1|L5|A|864
7ZJW|1|L5|G|865
7ZJW|1|L5|A|866
7ZJW|1|L5|C|867
7ZJW|1|L5|C|868
7ZJW|1|L5|U|869
7ZJW|1|L5|G|870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LH

60S ribosomal protein L6

Chain LI

60S ribosomal Protein uL30