HL_7ZJW_023

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|U|1070, 7ZJW|1|L5|C|1071, 7ZJW|1|L5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_023 not in the Motif Atlas

Geometric match to HL_8SP9_002

Geometric discrepancy: 0.3904

The information below is about HL_8SP9_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7ZJW|1|L5|G|1069
7ZJW|1|L5|U|1070
7ZJW|1|L5|C|1071
7ZJW|1|L5|C|1072
7ZJW|1|L5|C|1073
7ZJW|1|L5|C|1074

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LL

60S ribosomal protein L10