HL_7ZJW_027

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_027 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0706

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJW|1|L5|U|1333
7ZJW|1|L5|G|1334
7ZJW|1|L5|A|1335
7ZJW|1|L5|A|1336
7ZJW|1|L5|G|1337
7ZJW|1|L5|G|1338

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein eL13

Chain LT

60S ribosomal Protein eL18

Chain Ld

60S ribosomal protein L27a

Chain Ll

60S ribosomal protein L36