HL_7ZJW_043

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_043 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.158

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7ZJW|1|L5|A|2219
7ZJW|1|L5|C|2220
7ZJW|1|L5|G|2221
7ZJW|1|L5|A|2222
7ZJW|1|L5|G|2223
7ZJW|1|L5|A|2224
7ZJW|1|L5|A|2225
7ZJW|1|L5|C|2226
7ZJW|1|L5|U|2227

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lg

60S ribosomal protein eL31