3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
7ZJW|1|L5|C|3405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJW_061 not in the Motif Atlas
Geometric match to HL_5J7L_143
Geometric discrepancy: 0.1574
The information below is about HL_5J7L_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7ZJW|1|L5|C|3400
7ZJW|1|L5|G|3401
7ZJW|1|L5|C|3402
7ZJW|1|L5|G|3403
7ZJW|1|L5|G|3404
7ZJW|1|L5|C|3405
7ZJW|1|L5|G|3406

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain LJ
60S ribosomal protein eL8
Chain LQ
60S ribosomal protein L15

Coloring options:


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