HL_7ZJW_062

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_062 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2708

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ZJW|1|L5|G|3454
7ZJW|1|L5|A|3455
7ZJW|1|L5|A2M|3456
7ZJW|1|L5|G|3457
7ZJW|1|L5|A|3458
7ZJW|1|L5|A|3459
7ZJW|1|L5|A|3460
7ZJW|1|L5|U|3461
7ZJW|1|L5|PSU|3462
7ZJW|1|L5|C|3463

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ll

60S ribosomal protein L36

Chain Lq

60S ribosomal protein eL42