HL_7ZJW_065

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7ZJW|1|L5|A|3608, 7ZJW|1|L5|A|3609, 7ZJW|1|L5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_065 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.09

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|G|3605
7ZJW|1|L5|G|3606
7ZJW|1|L5|G|3607
7ZJW|1|L5|A|3608
7ZJW|1|L5|A|3609
7ZJW|1|L5|C|3610
7ZJW|1|L5|G|3611
7ZJW|1|L5|G|3612
7ZJW|1|L5|G|3613
7ZJW|1|L5|C|3614

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lh

60S ribosomal protein eL32