HL_7ZJW_066

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGGCCCGGGCCGCCGGUGAAAUAC

Length

26 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|G|3702
7ZJW|1|L5|G|3703
7ZJW|1|L5|A|3704
7ZJW|1|L5|G|3705
7ZJW|1|L5|G|3706
7ZJW|1|L5|C|3707
7ZJW|1|L5|C|3708
7ZJW|1|L5|C|3709
7ZJW|1|L5|G|3762
7ZJW|1|L5|G|3763
7ZJW|1|L5|G|3764
7ZJW|1|L5|C|3765
7ZJW|1|L5|C|3766
7ZJW|1|L5|G|3767
7ZJW|1|L5|C|3768
7ZJW|1|L5|C|3769
7ZJW|1|L5|G|3770
7ZJW|1|L5|G|3771
7ZJW|1|L5|U|3772
7ZJW|1|L5|G|3773
7ZJW|1|L5|A|3774
7ZJW|1|L5|A|3775
7ZJW|1|L5|A|3776
7ZJW|1|L5|U|3777
7ZJW|1|L5|A|3778
7ZJW|1|L5|C|3779

Current chains

Chain L5

28S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain Lx

60S ribosomal protein uL1