HL_7ZJW_071

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_071 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1914

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ZJW|1|L5|G|3996
7ZJW|1|L5|A|3997
7ZJW|1|L5|C|3998
7ZJW|1|L5|A|3999
7ZJW|1|L5|G|4000
7ZJW|1|L5|A|4001
7ZJW|1|L5|A|4002
7ZJW|1|L5|A|4003
7ZJW|1|L5|C|4004

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L11