HL_7ZJW_072

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_072 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1123

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7ZJW|1|L5|C|4016
7ZJW|1|L5|A|4017
7ZJW|1|L5|G|4018
7ZJW|1|L5|A|4019
7ZJW|1|L5|A|4020
7ZJW|1|L5|G|4021
7ZJW|1|L5|G|4022
7ZJW|1|L5|G|4023

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LW

60S ribosomal protein eL21

Chain Lq

60S ribosomal protein eL42