HL_7ZJW_080
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_080 not in the Motif Atlas
- Homologous match to HL_8C3A_066
- Geometric discrepancy: 0.1114
- The information below is about HL_8C3A_066
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7ZJW|1|L5|C|4349
7ZJW|1|L5|G|4350
7ZJW|1|L5|A|4351
7ZJW|1|L5|G|4352
7ZJW|1|L5|A|4353
7ZJW|1|L5|G|4354
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain E
- eEFSec
- Chain F
- Selenocysteine transfer RNA
- Chain LK
- 60S ribosomal protein L9
- Chain LY
- 60S ribosomal protein L23
- Chain Lp
- 60S ribosomal protein L40
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