HL_7ZJW_082

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7ZJW|1|L5|G|4440, 7ZJW|1|L5|C|4444

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_082 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.161

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|C|4434
7ZJW|1|L5|PSU|4435
7ZJW|1|L5|G|4436
7ZJW|1|L5|A|4437
7ZJW|1|L5|A|4438
7ZJW|1|L5|C|4439
7ZJW|1|L5|G|4440
7ZJW|1|L5|C|4441
7ZJW|1|L5|C|4442
7ZJW|1|L5|U|4443
7ZJW|1|L5|C|4444
7ZJW|1|L5|U|4445
7ZJW|1|L5|A|4446
7ZJW|1|L5|A|4447
7ZJW|1|L5|G|4448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain LR

60S ribosomal protein uL13

Chain Lp

60S ribosomal protein L40