HL_7ZJW_085

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_085 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1096

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7ZJW|1|L5|G|4714
7ZJW|1|L5|U|4715
7ZJW|1|L5|A|4716
7ZJW|1|L5|G|4717
7ZJW|1|L5|A|4718
7ZJW|1|L5|C|4719
7ZJW|1|L5|G|4720
7ZJW|1|L5|A|4721
7ZJW|1|L5|C|4722

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LS

60S ribosomal protein uL22