HL_7ZJW_111

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|G|837, 7ZJW|1|S2|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_111 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.3062

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7ZJW|1|S2|C|835
7ZJW|1|S2|C|836
7ZJW|1|S2|G|837
7ZJW|1|S2|A|838
7ZJW|1|S2|G|839

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sj

40S ribosomal protein S24