HL_7ZJW_114

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_114 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.0777

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJW|1|S2|C|995
7ZJW|1|S2|G|996
7ZJW|1|S2|A|997
7ZJW|1|S2|A|998
7ZJW|1|S2|A|999
7ZJW|1|S2|G|1000

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Ribosomal protein eS26

Chain SY

40S ribosomal protein uS15