HL_7ZJW_121

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_121 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.061

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7ZJW|1|S2|A|1354
7ZJW|1|S2|G|1355
7ZJW|1|S2|C|1356
7ZJW|1|S2|G|1357
7ZJW|1|S2|A|1358
7ZJW|1|S2|U|1359

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein SA

Chain SN

40S ribosomal protein uS5

Chain Sg

40S ribosomal protein eS21