HL_7ZJW_125

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_125 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.121

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7ZJW|1|S2|C|1566
7ZJW|1|S2|G|1567
7ZJW|1|S2|G|1568
7ZJW|1|S2|C|1569
7ZJW|1|S2|A|1570
7ZJW|1|S2|G|1571

Current chains

Chain S2

18S rRNA

Nearby chains

Chain B

SECIS Binding Protein 2

Chain Sd

40S ribosomal protein S18

Chain Se

40S Ribosomal protein eS19