HL_7ZJW_136

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_136 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0903

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7ZJW|1|L5|A2M|3456
7ZJW|1|L5|G|3457
7ZJW|1|L5|A|3458
7ZJW|1|L5|A|3459
7ZJW|1|L5|A|3460
7ZJW|1|L5|U|3461

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ll

60S ribosomal protein L36

Chain Lq

60S ribosomal protein eL42