HL_7ZJX_009

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_009 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1453

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7ZJX|1|L5|G|230
7ZJX|1|L5|U|231
7ZJX|1|L5|G|232
7ZJX|1|L5|U|233
7ZJX|1|L5|G|234
7ZJX|1|L5|A|235
7ZJX|1|L5|G|236
7ZJX|1|L5|G|237
7ZJX|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4

Chain Lb

Ribosomal protein L26