3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
7ZJX|1|L5|G|294, 7ZJX|1|L5|A|295, 7ZJX|1|L5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJX_010 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.1104
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

7ZJX|1|L5|C|289
7ZJX|1|L5|U|290
7ZJX|1|L5|U|291
7ZJX|1|L5|G|292
7ZJX|1|L5|G|293
7ZJX|1|L5|G|294
7ZJX|1|L5|A|295
7ZJX|1|L5|A|296
7ZJX|1|L5|U|297
7ZJX|1|L5|G|298

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LO
60S ribosomal protein eL13
Chain LQ
Ribosomal protein L15
Chain LT
60S ribosomal Protein eL18
Chain Ld
60S ribosomal protein L27a
Chain Lq
60S ribosomal protein eL42

Coloring options:


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