3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUGAAG(A2M)G
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZJX_013 not in the Motif Atlas
Geometric match to HL_4WF9_041
Geometric discrepancy: 0.3232
The information below is about HL_4WF9_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_65167.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

7ZJX|1|L5|U|392
7ZJX|1|L5|U|393
7ZJX|1|L5|G|394
7ZJX|1|L5|A|395
7ZJX|1|L5|A|396
7ZJX|1|L5|G|397
7ZJX|1|L5|A2M|398
7ZJX|1|L5|G|399

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LS
60S ribosomal protein uL22

Coloring options:


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