HL_7ZJX_013

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_013 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3232

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ZJX|1|L5|U|392
7ZJX|1|L5|U|393
7ZJX|1|L5|G|394
7ZJX|1|L5|A|395
7ZJX|1|L5|A|396
7ZJX|1|L5|G|397
7ZJX|1|L5|A2M|398
7ZJX|1|L5|G|399

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22