HL_7ZJX_018

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

7ZJX|1|L5|U|1070, 7ZJX|1|L5|C|1071, 7ZJX|1|L5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_018 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.3703

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7ZJX|1|L5|G|1069
7ZJX|1|L5|U|1070
7ZJX|1|L5|C|1071
7ZJX|1|L5|C|1072
7ZJX|1|L5|C|1073
7ZJX|1|L5|C|1074

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LL

Ribosomal protein L10