HL_7ZJX_026

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_026 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1225

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZJX|1|L5|G|1516
7ZJX|1|L5|G|1517
7ZJX|1|L5|A|1518
7ZJX|1|L5|A|1519
7ZJX|1|L5|A|1520
7ZJX|1|L5|C|1521

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SW

40S ribosomal protein S11

Chain SY

40S ribosomal protein S13