HL_7ZJX_039

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

7ZJX|1|L5|G|2264, 7ZJX|1|L5|A|2266, 7ZJX|1|L5|U|2268

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_039 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2138

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7ZJX|1|L5|A|2263
7ZJX|1|L5|G|2264
7ZJX|1|L5|OMC|2265
7ZJX|1|L5|A|2266
7ZJX|1|L5|OMG|2267
7ZJX|1|L5|U|2268
7ZJX|1|L5|U|2269

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lo

60S ribosomal protein eL39