HL_7ZJX_053

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_053 not in the Motif Atlas

Homologous match to HL_8C3A_044

Geometric discrepancy: 0.5692

The information below is about HL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28980.2

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

7ZJX|1|L5|G|2744
7ZJX|1|L5|G|2745
7ZJX|1|L5|U|3327
7ZJX|1|L5|A|3328
7ZJX|1|L5|G|3329
7ZJX|1|L5|C|3330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain ST

40S ribosomal protein S8

Chain SW

40S ribosomal protein S11