HL_7ZJX_082
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_082 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2849
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7ZJX|1|L8|C|47
7ZJX|1|L8|A|48
7ZJX|1|L8|G|49
7ZJX|1|L8|C|50
7ZJX|1|L8|U|51
7ZJX|1|L8|A|52
7ZJX|1|L8|G|53
7ZJX|1|L8|C|54
7ZJX|1|L8|PSU|55
7ZJX|1|L8|G|56
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Ribosomal_L23eN domain-containing protein
- Chain Lk
- 60S ribosomal protein L35
- Chain Lm
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
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