HL_7ZJX_083
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7ZJX|1|L8|C|81, 7ZJX|1|L8|A|84, 7ZJX|1|L8|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_083 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5859
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ZJX|1|L8|G|68
7ZJX|1|L8|PSU|69
7ZJX|1|L8|G|70
7ZJX|1|L8|A|71
7ZJX|1|L8|A|72
7ZJX|1|L8|U|73
7ZJX|1|L8|U|74
7ZJX|1|L8|OMG|75
7ZJX|1|L8|C|76
7ZJX|1|L8|A|77
7ZJX|1|L8|G|78
7ZJX|1|L8|G|79
7ZJX|1|L8|A|80
7ZJX|1|L8|C|81
7ZJX|1|L8|A|82
7ZJX|1|L8|C|83
7ZJX|1|L8|A|84
7ZJX|1|L8|U|85
7ZJX|1|L8|U|86
7ZJX|1|L8|G|87
7ZJX|1|L8|A|88
7ZJX|1|L8|U|89
7ZJX|1|L8|C|90
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lb
- Ribosomal protein L26
- Chain Lk
- 60S ribosomal protein L35
- Chain Lm
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
Coloring options: