HL_7ZJX_115

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

7ZJX|1|S2|U|1372

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_115 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.2913

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7ZJX|1|S2|G|1367
7ZJX|1|S2|PSU|1368
7ZJX|1|S2|U|1369
7ZJX|1|S2|A|1370
7ZJX|1|S2|A|1371
7ZJX|1|S2|U|1372
7ZJX|1|S2|U|1373
7ZJX|1|S2|C|1374

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S17