HL_7ZJX_132

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

7ZJX|1|S2|A|465

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_132 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1327

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

7ZJX|1|S2|OMC|463
7ZJX|1|S2|C|464
7ZJX|1|S2|A|465
7ZJX|1|S2|A|466
7ZJX|1|S2|G|467
7ZJX|1|S2|G|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LY

60S ribosomal protein L23

Chain SR

40S ribosomal protein S6