HL_7ZJX_134
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 7ZJX|1|S2|U|1622, 7ZJX|1|S2|U|1623, 7ZJX|1|S2|A|1624
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_134 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.23
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7ZJX|1|S2|A|1615
7ZJX|1|S2|U|1616
7ZJX|1|S2|U|1617
7ZJX|1|S2|G|1618
7ZJX|1|S2|C|1619
7ZJX|1|S2|A|1620
7ZJX|1|S2|A|1621
7ZJX|1|S2|U|1622
7ZJX|1|S2|U|1623
7ZJX|1|S2|A|1624
7ZJX|1|S2|U|1625
7ZJX|1|S2|PSU|1626
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- Selenocysteine insertion sequence-binding protein 2
- Chain SH
- 40S ribosomal protein S29
- Chain Sa
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S18
- Chain Se
- 40S Ribosomal protein eS19
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