HL_7ZJX_135
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 7ZJX|1|S2|U|1301, 7ZJX|1|S2|G|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJX_135 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.1915
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
7ZJX|1|S2|A|1296
7ZJX|1|S2|U|1297
7ZJX|1|S2|U|1298
7ZJX|1|S2|G|1299
7ZJX|1|S2|A|1300
7ZJX|1|S2|U|1301
7ZJX|1|S2|A|1302
7ZJX|1|S2|G|1303
7ZJX|1|S2|C|1304
7ZJX|1|S2|U|1305
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- Selenocysteine insertion sequence-binding protein 2
- Chain S
- Selenocysteine insertion sequence 1; SECIS_1
- Chain SD
- Ubiquitin carboxyl extension protein 80
- Chain SH
- 40S ribosomal protein S29
- Chain Sa
- 40S ribosomal protein S15
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