HL_7ZOD_025

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

7ZOD|1|b|A|781, 7ZOD|1|b|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_025 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3341

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7ZOD|1|b|U|779
7ZOD|1|b|G|780
7ZOD|1|b|A|781
7ZOD|1|b|A|782
7ZOD|1|b|A|783
7ZOD|1|b|G|784
7ZOD|1|b|G|785

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2