HL_7ZOD_029

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_029 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1124

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ZOD|1|b|G|978
7ZOD|1|b|A|979
7ZOD|1|b|A|980
7ZOD|1|b|A|981
7ZOD|1|b|C|982
7ZOD|1|b|A|983
7ZOD|1|b|A|984
7ZOD|1|b|C|985

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21