HL_7ZOD_068

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7ZOD|1|b|G|2751, 7ZOD|1|b|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_068 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0621

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZOD|1|b|C|2745
7ZOD|1|b|U|2746
7ZOD|1|b|G|2747
7ZOD|1|b|A|2748
7ZOD|1|b|A|2749
7ZOD|1|b|A|2750
7ZOD|1|b|G|2751
7ZOD|1|b|C|2752
7ZOD|1|b|A|2753
7ZOD|1|b|U|2754
7ZOD|1|b|C|2755
7ZOD|1|b|U|2756
7ZOD|1|b|A|2757
7ZOD|1|b|A|2758
7ZOD|1|b|G|2759

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain j

50S ribosomal protein L13