HL_7ZOD_077

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_077 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2625

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ZOD|1|b|G|2304
7ZOD|1|b|U|2305
7ZOD|1|b|C|2306
7ZOD|1|b|G|2307
7ZOD|1|b|G|2308
7ZOD|1|b|A|2309
7ZOD|1|b|C|2310
7ZOD|1|b|A|2311
7ZOD|1|b|U|2312

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5