HL_7ZOD_078

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

7ZOD|1|b|U|2797, 7ZOD|1|b|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_078 not in the Motif Atlas

Geometric match to HL_5J7L_176

Geometric discrepancy: 0.279

The information below is about HL_5J7L_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7ZOD|1|b|U|2796
7ZOD|1|b|U|2797
7ZOD|1|b|U|2798
7ZOD|1|b|A|2799
7ZOD|1|b|A|2800

Current chains

Chain b

23S rRNA

Nearby chains