HL_7ZP8_006

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

7ZP8|1|b|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_006 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1346

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

7ZP8|1|b|U|137
7ZP8|1|b|U|138
7ZP8|1|b|U|139
7ZP8|1|b|C|140
7ZP8|1|b|G|141
7ZP8|1|b|A|142

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23