7ZP8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZP8_074 | 1/a/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_7ZP8_001 | 1/a/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_7ZP8_002 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_7ZP8_003 | 1/b/59:68 | tRNA anticodon loop | geometric HL_6JXM_002 NA | |
| HL_7ZP8_004 | 1/b/87:95 | No text annotation | geometric HL_5J7L_135 NA | |
| HL_7ZP8_005 | 1/b/123:128 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_7ZP8_006 | 1/b/137:142 | UNCG | geometric HL_5LYS_002 HL_61337.1 | |
| HL_7ZP8_007 | 1/b/158:168 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_7ZP8_008 | 1/b/194:201 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_7ZP8_009 | 1/b/225:230 | No text annotation | geometric HL_5J7L_140 NA | |
| HL_7ZP8_010 | 1/b/246:252 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7ZP8_011 | 1/b/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_7ZP8_012 | 1/b/319:323 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7ZP8_013 | 1/b/327:335 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_7ZP8_014 | 1/b/382:392 | No text annotation | geometric HL_5J7L_145 NA | |
| HL_7ZP8_015 | 1/b/410:417 | Pseudoknot geometry | geometric HL_5J7L_146 NA | |
| HL_7ZP8_016 | 1/b/462:467 | GNRA | geometric HL_4LFB_028 HL_34789.1 | |
| HL_7ZP8_017 | 1/b/487:493 | GNRA | geometric HL_5J7L_148 NA | |
| HL_7ZP8_019 | 1/b/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_7ZP8_020 | 1/b/611:617 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_7ZP8_021 | 1/b/629:634 | GNRA | geometric HL_7A0S_047 HL_34789.1 | |
| HL_7ZP8_022 | 1/b/641:647 | GNRA | geometric HL_5O7H_001 NA | |
| HL_7ZP8_023 | 1/b/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 NA | |
| HL_7ZP8_024 | 1/b/744:753 | No text annotation | geometric HL_7A0S_022 HL_50204.1 | |
| HL_7ZP8_025 | 1/b/779:785 | UNCG variation | geometric HL_2NUE_001 NA | |
| HL_7ZP8_026 | 1/b/826:831 | No text annotation | geometric HL_5J7L_157 NA | |
| HL_7ZP8_075 | 1/b/881:895 | No text annotation | ||
| HL_7ZP8_027 | 1/b/883:893 | No text annotation | ||
| HL_7ZP8_028 | 1/b/955:962 | GNRA | geometric HL_4WF9_027 HL_34789.1 | |
| HL_7ZP8_029 | 1/b/978:985 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7ZP8_032 | 1/b/1170:1179 | No text annotation | ||
| HL_7ZP8_033 | 1/b/1222:1227 | GNRA | geometric HL_5J7L_164 NA | |
| HL_7ZP8_034 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 NA | |
| HL_7ZP8_035 | 1/b/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 NA | |
| HL_7ZP8_036 | 1/b/1363:1368 | GNRA | geometric HL_5J7L_167 NA | |
| HL_7ZP8_037 | 1/b/1389:1398 | No text annotation | geometric HL_5J7L_168 NA | |
| HL_7ZP8_038 | 1/b/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
| HL_7ZP8_039 | 1/b/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_7ZP8_041 | 1/b/1565:1568 | No text annotation | geometric HL_7RQB_039 NA | |
| HL_7ZP8_042 | 1/b/1612:1619 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_7ZP8_043 | 1/b/1630:1636 | GNRA | geometric HL_5J7L_174 NA | |
| HL_7ZP8_044 | 1/b/1691:1696 | UNCG | geometric HL_4WF9_040 HL_61337.1 | |
| HL_7ZP8_046 | 1/b/1752:1756 | No text annotation | geometric HL_5J7L_177 NA | |
| HL_7ZP8_047 | 1/b/1777:1787 | No text annotation | geometric HL_7RQB_045 NA | |
| HL_7ZP8_048 | 1/b/1806:1811 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_7ZP8_049 | 1/b/1868:1873 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7ZP8_050 | 1/b/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7ZP8_076 | 1/b/1950:1956 | No text annotation | ||
| HL_7ZP8_052 | 1/b/2027:2036 | No text annotation | geometric HL_4WF9_047 HL_78372.1 | |
| HL_7ZP8_054 | 1/b/2209:2215 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_7ZP8_055 | 1/b/2248:2256 | No text annotation | geometric HL_4WF9_049 HL_11974.1 | |
| HL_7ZP8_056 | 1/b/2264:2276 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_7ZP8_057 | 1/b/2303:2313 | No text annotation | geometric HL_7RQB_055 NA | |
| HL_7ZP8_058 | 1/b/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 NA | |
| HL_7ZP8_059 | 1/b/2356:2361 | GNRA | geometric HL_4V88_218 NA | |
| HL_7ZP8_060 | 1/b/2374:2379 | GNRA | geometric HL_5F9F_003 HL_34789.1 | |
| HL_7ZP8_061 | 1/b/2404:2413 | No text annotation | geometric HL_5J7L_192 NA | |
| HL_7ZP8_062 | 1/b/2471:2479 | No text annotation | geometric HL_7RQB_060 NA | |
| HL_7ZP8_063 | 1/b/2528:2535 | GNRA variation | geometric HL_5J7L_194 NA | |
| HL_7ZP8_064 | 1/b/2551:2557 | No text annotation | geometric HL_4WF9_058 HL_48677.1 | |
| HL_7ZP8_065 | 1/b/2594:2599 | GNRA | geometric HL_4LFB_028 HL_34789.1 | |
| HL_7ZP8_066 | 1/b/2658:2663 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_7ZP8_067 | 1/b/2701:2706 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_7ZP8_068 | 1/b/2745:2759 | No text annotation | geometric HL_5J7L_199 NA | |
| HL_7ZP8_069 | 1/b/2795:2801 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_7ZP8_070 | 1/b/2819:2827 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_7ZP8_071 | 1/b/2856:2861 | GNRA | geometric HL_5J7L_152 NA | |
| HL_7ZP8_072 | 1/v/30:40 | No text annotation | homologous HL_4V7M_033 NA | |
| HL_7ZP8_073 | 1/v/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4GCW_002 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZP8_018 | No text annotation | ||
| HL_7ZP8_078 | No text annotation | ||
| HL_7ZP8_030 | No text annotation | ||
| HL_7ZP8_031 | No text annotation | ||
| HL_7ZP8_079 | No text annotation | ||
| HL_7ZP8_040 | UNCG | ||
| HL_7ZP8_045 | Mini UNCG | ||
| HL_7ZP8_051 | No text annotation | ||
| HL_7ZP8_077 | No text annotation | ||
| HL_7ZP8_053 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZP8_001 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_7ZP8_002 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.5 | |
| IL_7ZP8_003 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7ZP8_004 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
| IL_7ZP8_005 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_7ZP8_006 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_7ZP8_007 | 1/b/36:37, 1/b/442:444 | Single bulged A | geometric IL_5J7L_246 NA | |
| IL_7ZP8_008 | 1/b/43:44, 1/b/434:436 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_7ZP8_009 | 1/b/81:85, 1/b/97:105 | Kink-turn | homologous IL_8VTW_004 NA | |
| IL_7ZP8_010 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_7ZP8_011 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_7ZP8_012 | 1/b/269:271, 1/b/366:370 | No text annotation | geometric IL_5J7L_252 NA | |
| IL_7ZP8_013 | 1/b/274:281, 1/b/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_7ZP8_014 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_76658.1 | |
| IL_7ZP8_015 | 1/b/481:484, 1/b/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_7ZP8_016 | 1/b/536:539, 1/b/554:557 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_7ZP8_017 | 1/b/564:566, 1/b/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_7ZP8_018 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 NA | |
| IL_7ZP8_019 | 1/b/672:674, 1/b/806:808 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.1 | |
| IL_7ZP8_020 | 1/b/674:678, 1/b/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7ZP8_021 | 1/b/697:698, 1/b/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_7ZP8_022 | 1/b/702:703, 1/b/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_7ZP8_023 | 1/b/703:707, 1/b/724:728 | Triple sheared | geometric IL_4V9F_027 IL_15190.1 | |
| IL_7ZP8_024 | 1/b/738:740, 1/b/757:758 | Major groove platform | geometric IL_4WF9_026 IL_48076.7 | |
| IL_7ZP8_025 | 1/b/775:777, 1/b/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_7ZP8_026 | 1/b/844:848, 1/b/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_7ZP8_027 | 1/b/849:850, 1/b/927:929 | Single stack bend | geometric IL_4C7O_002 NA | |
| IL_7ZP8_028 | 1/b/856:862, 1/b/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_7ZP8_029 | 1/b/862:863, 1/b/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_7ZP8_030 | 1/b/864:868, 1/b/909:912 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7ZP8_031 | 1/b/870:872, 1/b/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 NA | |
| IL_7ZP8_032 | 1/b/875:879, 1/b/898:902 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7ZP8_034 | 1/b/994:996, 1/b/1159:1160 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7ZP8_035 | 1/b/998:1002, 1/b/1153:1157 | UAA/GAN | geometric IL_5J7L_277 NA | |
| IL_7ZP8_036 | 1/b/1004:1011, 1/b/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_7ZP8_037 | 1/b/1011:1013, 1/b/1149:1150 | Single bulged U | geometric IL_4WF9_038 IL_97561.1 | |
| IL_7ZP8_038 | 1/b/1018:1024, 1/b/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_7ZP8_039 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7ZP8_040 | 1/b/1031:1034, 1/b/1121:1123 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_7ZP8_041 | 1/b/1038:1041, 1/b/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_7ZP8_042 | 1/b/1196:1198, 1/b/1247:1250 | Isolated cWS basepair | geometric IL_5J7L_286 NA | |
| IL_7ZP8_043 | 1/b/1202:1206, 1/b/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_7ZP8_044 | 1/b/1208:1215, 1/b/1234:1238 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_7ZP8_108 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7ZP8_046 | 1/b/1310:1313, 1/b/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.1 | |
| IL_7ZP8_047 | 1/b/1319:1323, 1/b/1331:1333 | C-loop | geometric IL_5J7L_291 NA | |
| IL_7ZP8_048 | 1/b/1351:1355, 1/b/1376:1380 | UAA/GAN | geometric IL_5J7L_292 NA | |
| IL_7ZP8_049 | 1/b/1357:1361, 1/b/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_7ZP8_050 | 1/b/1415:1416, 1/b/1582:1587 | No text annotation | geometric IL_5J7L_294 NA | |
| IL_7ZP8_051 | 1/b/1417:1421, 1/b/1577:1581 | UAA/GAN | geometric IL_5J7L_295 NA | |
| IL_7ZP8_052 | 1/b/1432:1435, 1/b/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_7ZP8_053 | 1/b/1437:1440, 1/b/1551:1555 | tSH-tHW | geometric IL_5J7L_297 NA | |
| IL_7ZP8_054 | 1/b/1450:1451, 1/b/1459:1461 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_7ZP8_055 | 1/b/1468:1471, 1/b/1520:1524 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_7ZP8_056 | 1/b/1474:1478, 1/b/1513:1517 | tSH-tHW-tHS | geometric IL_5J7L_300 NA | |
| IL_7ZP8_057 | 1/b/1481:1482, 1/b/1507:1510 | No text annotation | ||
| IL_7ZP8_058 | 1/b/1489:1491, 1/b/1499:1500 | Single bulged A | geometric IL_5J7L_302 NA | |
| IL_7ZP8_059 | 1/b/1526:1529, 1/b/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 NA | |
| IL_7ZP8_060 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_7ZP8_061 | 1/b/1663:1665, 1/b/1995:1997 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_7ZP8_062 | 1/b/1666:1669, 1/b/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.1 | |
| IL_7ZP8_109 | 1/b/1666:1674, 1/b/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7ZP8_063 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_7ZP8_064 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_7ZP8_065 | 1/b/1712:1718, 1/b/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 NA | |
| IL_7ZP8_066 | 1/b/1720:1724, 1/b/1736:1740 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.1 | |
| IL_7ZP8_067 | 1/b/1727:1728, 1/b/1731:1733 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_7ZP8_068 | 1/b/1770:1771, 1/b/1980:1982 | Single bulged A | geometric IL_5J7L_312 NA | |
| IL_7ZP8_069 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related | geometric IL_5J7L_313 NA | |
| IL_7ZP8_070 | 1/b/1837:1840, 1/b/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 NA | |
| IL_7ZP8_071 | 1/b/1841:1842, 1/b/1898:1901 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_7ZP8_072 | 1/b/1846:1849, 1/b/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_4V9F_068 IL_73108.1 | |
| IL_7ZP8_110 | 1/b/1851:1860, 1/b/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_7ZP8_073 | 1/b/1864:1867, 1/b/1874:1878 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_7ZP8_074 | 1/b/1933:1934, 1/b/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_7ZP8_075 | 1/b/1934:1945, 1/b/1961:1964 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_7ZP8_076 | 1/b/2050:2052, 1/b/2617:2618 | Major groove platform | geometric IL_7A0S_073 IL_48076.7 | |
| IL_7ZP8_077 | 1/b/2054:2056, 1/b/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_7ZP8_078 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7ZP8_079 | 1/b/2070:2071, 1/b/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7ZP8_080 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_7ZP8_081 | 1/b/2085:2087, 1/b/2232:2234 | Isolated non-canonical cWW pair | geometric IL_7A0S_078 IL_71625.1 | |
| IL_7ZP8_083 | 1/b/2202:2204, 1/b/2220:2221 | Single bulged U | geometric IL_5J7L_331 NA | |
| IL_7ZP8_084 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation | geometric IL_5J7L_332 NA | |
| IL_7ZP8_085 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_7ZP8_086 | 1/b/2401:2403, 1/b/2414:2415 | No text annotation | ||
| IL_7ZP8_087 | 1/b/2453:2454, 1/b/2498:2500 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7ZP8_088 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform | geometric IL_5T5A_002 IL_48076.7 | |
| IL_7ZP8_089 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7ZP8_090 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_7ZP8_091 | 1/b/2466:2470, 1/b/2480:2484 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_7ZP8_092 | 1/b/2507:2508, 1/b/2580:2582 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_7ZP8_093 | 1/b/2510:2512, 1/b/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_7ZP8_094 | 1/b/2512:2513, 1/b/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_7ZP8_095 | 1/b/2522:2523, 1/b/2540:2543 | Major groove platform with intercalation | geometric IL_5J7L_342 NA | |
| IL_7ZP8_096 | 1/b/2591:2592, 1/b/2601:2603 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7ZP8_097 | 1/b/2636:2640, 1/b/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 NA | |
| IL_7ZP8_098 | 1/b/2652:2658, 1/b/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_7ZP8_099 | 1/b/2680:2684, 1/b/2725:2727 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7ZP8_100 | 1/b/2687:2691, 1/b/2718:2722 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 NA | |
| IL_7ZP8_101 | 1/b/2695:2696, 1/b/2711:2714 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_7ZP8_102 | 1/b/2737:2742, 1/b/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7ZP8_103 | 1/b/2806:2811, 1/b/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_7ZP8_104 | 1/b/2838:2839, 1/b/2878:2880 | Major groove intercalation | geometric IL_5J7L_352 NA | |
| IL_7ZP8_105 | 1/b/2843:2846, 1/b/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 NA | |
| IL_7ZP8_106 | 1/b/2847:2852, 1/b/2865:2869 | tHS double platform | geometric IL_5J7L_354 NA | |
| IL_7ZP8_107 | 1/v/2:7, 1/v/66:71 | No text annotation | geometric IL_4LFB_030 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZP8_033 | No text annotation | ||
| IL_7ZP8_045 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_7ZP8_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZP8_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_7ZP8_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_7ZP8_012 | 1/b/30:31, 1/b/474:484, 1/b/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_7ZP8_013 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_7ZP8_003 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7ZP8_004 | 1/b/683:689, 1/b/773:775, 1/b/791:794 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7ZP8_005 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7ZP8_014 | 1/b/1043:1059, 1/b/1079:1090, 1/b/1101:1112 | No text annotation | ||
| J3_7ZP8_006 | 1/b/1298:1303, 1/b/1625:1627, 1/b/1639:1642 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7ZP8_007 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7ZP8_015 | 1/b/1344:1350, 1/b/1381:1385, 1/b/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_7ZP8_016 | 1/b/1424:1429, 1/b/1564:1565, 1/b/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_7ZP8_008 | 1/b/2091:2093, 1/b/2196:2200, 1/b/2223:2228 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7ZP8_017 | 1/b/2282:2284, 1/b/2384:2395, 1/b/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7ZP8_009 | 1/b/2295:2297, 1/b/2321:2323, 1/b/2332:2337 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7ZP8_018 | 1/b/2295:2299, 1/b/2317:2323, 1/b/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_7ZP8_019 | 1/b/2517:2520, 1/b/2545:2550, 1/b/2558:2567 | No text annotation | ||
| J3_7ZP8_010 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_7ZP8_011 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_7ZP8_020 | 1/v/7:27, 1/v/43:49, 1/v/65:66 | No text annotation | ||
| J4_7ZP8_001 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_7ZP8_002 | 1/b/297:301, 1/b/316:319, 1/b/323:325, 1/b/337:341 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_7ZP8_012 | 1/b/601:604, 1/b/624:628, 1/b/635:638, 1/b/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7ZP8_004 | 1/b/1270:1276, 1/b/1294:1295, 1/b/1645:1648, 1/b/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_7ZP8_005 | 1/b/1310:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_7ZP8_006 | 1/b/1313:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_7ZP8_007 | 1/b/1444:1445, 1/b/1466:1467, 1/b/1525:1526, 1/b/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_7ZP8_008 | 1/b/1772:1776, 1/b/1788:1792, 1/b/1827:1830, 1/b/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7ZP8_009 | 1/b/1833:1835, 1/b/1905:1906, 1/b/1924:1933, 1/b/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_7ZP8_010 | 1/b/2285:2289, 1/b/2343:2347, 1/b/2370:2372, 1/b/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_7ZP8_011 | 1/b/2643:2646, 1/b/2674:2676, 1/b/2731:2735, 1/b/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_7ZP8_001 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_7ZP8_002 | 1/b/531:533, 1/b/560:564, 1/b/577:579, 1/b/1261:1262, 1/b/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_7ZP8_003 | 1/b/584:589, 1/b/668:671, 1/b/809:812, 1/b/1195:1196, 1/b/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_7ZP8_004 | 1/b/1674:1682, 1/b/1706:1707, 1/b/1751:1752, 1/b/1756:1764, 1/b/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_7ZP8_007 | 1/b/2057:2064, 1/b/2446:2454, 1/b/2498:2506, 1/b/2583:2588, 1/b/2606:2611 | No text annotation | ||
| J5_7ZP8_006 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2282, 1/b/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_7ZP8_001 | 1/b/45:46, 1/b/179:184, 1/b/212:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_7ZP8_002 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2284, 1/b/2384:2395, 1/b/2421:2435 | No text annotation | ||
| J7_7ZP8_001 | 1/b/8:15, 1/b/525:531, 1/b/2018:2023, 1/b/2040:2043, 1/b/2625:2630, 1/b/2788:2789, 1/b/2894:2895 | No text annotation | ||
| J7_7ZP8_002 | 1/b/817:822, 1/b/835:838, 1/b/940:946, 1/b/971:976, 1/b/987:991, 1/b/1163:1164, 1/b/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_7ZP8_003 | No text annotation | ||
| J5_7ZP8_005 | No text annotation |
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