HL_7ZP8_015

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7ZP8|1|b|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_015 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.128

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ZP8|1|b|G|410
7ZP8|1|b|G|411
7ZP8|1|b|A|412
7ZP8|1|b|C|413
7ZP8|1|b|C|414
7ZP8|1|b|A|415
7ZP8|1|b|U|416
7ZP8|1|b|C|417

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15