HL_7ZP8_070

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7ZP8|1|b|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZP8_070 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1116

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ZP8|1|b|G|2819
7ZP8|1|b|A|2820
7ZP8|1|b|A|2821
7ZP8|1|b|G|2822
7ZP8|1|b|A|2823
7ZP8|1|b|C|2824
7ZP8|1|b|G|2825
7ZP8|1|b|A|2826
7ZP8|1|b|C|2827

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain n

50S ribosomal protein L17