HL_7ZPQ_017

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

7ZPQ|1|2|C|709, 7ZPQ|1|2|A|713, 7ZPQ|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.307

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|2|G|703
7ZPQ|1|2|C|704
7ZPQ|1|2|U|705
7ZPQ|1|2|A|706
7ZPQ|1|2|A|707
7ZPQ|1|2|C|708
7ZPQ|1|2|C|709
7ZPQ|1|2|U|710
7ZPQ|1|2|U|711
7ZPQ|1|2|G|712
7ZPQ|1|2|A|713
7ZPQ|1|2|G|714
7ZPQ|1|2|C|726
7ZPQ|1|2|U|727
7ZPQ|1|2|U|728
7ZPQ|1|2|G|729
7ZPQ|1|2|G|730
7ZPQ|1|2|C|731
7ZPQ|1|2|G|732
7ZPQ|1|2|A|733
7ZPQ|1|2|A|734
7ZPQ|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A