7ZPQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZPQ_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7ZPQ_002 | 1/2/70:81 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_7ZPQ_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7ZPQ_118 | 1/2/186:199 | No text annotation | ||
| HL_7ZPQ_004 | 1/2/190:195 | No text annotation | ||
| HL_7ZPQ_005 | 1/2/230:235 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ZPQ_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7ZPQ_007 | 1/2/276:279 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7ZPQ_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7ZPQ_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7ZPQ_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7ZPQ_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_7ZPQ_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7ZPQ_013 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7ZPQ_014 | 1/2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7ZPQ_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7ZPQ_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7ZPQ_019 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.6 | |
| HL_7ZPQ_122 | 1/2/829:843 | No text annotation | homologous HL_8P9A_236 HL_88364.2 | |
| HL_7ZPQ_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7ZPQ_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_7ZPQ_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7ZPQ_024 | 1/2/1055:1064 | No text annotation | ||
| HL_7ZPQ_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_7ZPQ_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_7ZPQ_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7ZPQ_028 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7ZPQ_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_7ZPQ_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7ZPQ_031 | 1/2/1359:1364 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_7ZPQ_032 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_7ZPQ_033 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_7ZPQ_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7ZPQ_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7ZPQ_036 | 1/2/1698:1703 | No text annotation | ||
| HL_7ZPQ_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7ZPQ_119 | 1/3/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_7ZPQ_038 | 1/3/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7ZPQ_039 | 1/3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7ZPQ_040 | 1/3/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_7ZPQ_120 | 1/4/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7ZPQ_041 | 1/4/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7ZPQ_042 | 1/4/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7ZPQ_043 | 1/5/38:45 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_7ZPQ_044 | 1/5/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7ZPQ_045 | 1/5/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7ZPQ_046 | 1/5/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7ZPQ_047 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7ZPQ_048 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7ZPQ_049 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7ZPQ_050 | 1/5/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7ZPQ_051 | 1/5/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7ZPQ_052 | 1/5/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7ZPQ_053 | 1/5/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7ZPQ_123 | 1/5/542:549 | No text annotation | ||
| HL_7ZPQ_055 | 1/5/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7ZPQ_056 | 1/5/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7ZPQ_057 | 1/5/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7ZPQ_058 | 1/5/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7ZPQ_059 | 1/5/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_7ZPQ_060 | 1/5/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7ZPQ_061 | 1/5/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7ZPQ_062 | 1/5/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7ZPQ_063 | 1/5/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7ZPQ_064 | 1/5/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7ZPQ_065 | 1/5/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_7ZPQ_066 | 1/5/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_7ZPQ_067 | 1/5/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7ZPQ_068 | 1/5/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7ZPQ_069 | 1/5/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_7ZPQ_070 | 1/5/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7ZPQ_071 | 1/5/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_7ZPQ_072 | 1/5/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_7ZPQ_073 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7ZPQ_074 | 1/5/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7ZPQ_075 | 1/5/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_7ZPQ_076 | 1/5/1567:1571 | No text annotation | ||
| HL_7ZPQ_077 | 1/5/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7ZPQ_078 | 1/5/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_7ZPQ_079 | 1/5/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7ZPQ_080 | 1/5/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7ZPQ_081 | 1/5/1760:1765 | GNRA related | homologous HL_5TBW_039 NA | |
| HL_7ZPQ_082 | 1/5/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7ZPQ_083 | 1/5/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7ZPQ_084 | 1/5/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7ZPQ_085 | 1/5/1923:1928 | UNCG | geometric HL_5TBW_043 NA | |
| HL_7ZPQ_087 | 1/5/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_7ZPQ_088 | 1/5/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7ZPQ_089 | 1/5/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7ZPQ_090 | 1/5/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7ZPQ_091 | 1/5/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7ZPQ_092 | 1/5/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7ZPQ_093 | 1/5/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7ZPQ_095 | 1/5/2535:2544 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_7ZPQ_096 | 1/5/2568:2573 | No text annotation | ||
| HL_7ZPQ_097 | 1/5/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7ZPQ_098 | 1/5/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7ZPQ_099 | 1/5/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7ZPQ_100 | 1/5/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7ZPQ_101 | 1/5/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7ZPQ_102 | 1/5/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7ZPQ_103 | 1/5/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7ZPQ_104 | 1/5/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7ZPQ_105 | 1/5/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7ZPQ_106 | 1/5/2920:2926 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7ZPQ_107 | 1/5/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7ZPQ_108 | 1/5/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_7ZPQ_109 | 1/5/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7ZPQ_110 | 1/5/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7ZPQ_111 | 1/5/3194:3197 | Mini UNCG | geometric HL_4WF9_037 HL_48778.2 | |
| HL_7ZPQ_112 | 1/5/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7ZPQ_113 | 1/5/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7ZPQ_121 | 1/5/3349:3356 | No text annotation | ||
| HL_7ZPQ_114 | 1/5/3350:3353 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_7ZPQ_115 | 1/6/12:23 | No text annotation | homologous HL_1SER_001 NA | |
| HL_7ZPQ_116 | 1/6/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_7ZPQ_117 | 1/6/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZPQ_016 | No text annotation | ||
| HL_7ZPQ_017 | No text annotation | ||
| HL_7ZPQ_020 | Pseudoknot geometry | ||
| HL_7ZPQ_054 | No text annotation | ||
| HL_7ZPQ_086 | No text annotation | ||
| HL_7ZPQ_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZPQ_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_7ZPQ_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7ZPQ_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7ZPQ_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7ZPQ_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7ZPQ_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7ZPQ_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7ZPQ_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7ZPQ_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7ZPQ_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7ZPQ_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_7ZPQ_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_3CZW_002 NA | |
| IL_7ZPQ_013 | 1/2/186:190, 1/2/195:199 | No text annotation | ||
| IL_7ZPQ_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_7ZPQ_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
| IL_7ZPQ_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7ZPQ_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_7ZPQ_018 | 1/2/275:276, 1/2/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
| IL_7ZPQ_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7ZPQ_020 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7ZPQ_021 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7ZPQ_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7ZPQ_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7ZPQ_024 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7ZPQ_025 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7ZPQ_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_7ZPQ_027 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_7ZPQ_028 | 1/2/514:516, 1/2/536:543 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_7ZPQ_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7ZPQ_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_7ZPQ_031 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7ZPQ_032 | 1/2/557:559, 1/2/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_7ZPQ_033 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7ZPQ_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7ZPQ_035 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7ZPQ_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7ZPQ_037 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_7ZPQ_038 | 1/2/650:656, 1/2/679:684 | No text annotation | ||
| IL_7ZPQ_039 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7ZPQ_040 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7ZPQ_041 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_7ZPQ_042 | 1/2/817:822, 1/2/850:854 | No text annotation | ||
| IL_7ZPQ_043 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_7ZPQ_239 | 1/2/868:870, 1/2/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_7ZPQ_240 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_7ZPQ_046 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7ZPQ_047 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7ZPQ_048 | 1/2/893:895, 1/2/917:919 | Isolated non-canonical cWW pair | geometric IL_2OE5_001 IL_28037.2 | |
| IL_7ZPQ_241 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_7ZPQ_049 | 1/2/895:899, 1/2/910:917 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_7ZPQ_050 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_7ZPQ_051 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7ZPQ_052 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7ZPQ_053 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7ZPQ_054 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_7ZPQ_055 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7ZPQ_056 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7ZPQ_057 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7ZPQ_058 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_7ZPQ_059 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7ZPQ_060 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7ZPQ_061 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_7ZPQ_062 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_7ZPQ_242 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7ZPQ_063 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_7ZPQ_064 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_7ZPQ_065 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7ZPQ_066 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7ZPQ_243 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_7ZPQ_067 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7ZPQ_068 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7ZPQ_069 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7ZPQ_070 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_7ZPQ_071 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_7ZPQ_072 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7ZPQ_073 | 1/2/1352:1354, 1/2/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_7ZPQ_074 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_7ZPQ_075 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_7ZPQ_076 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_7ZPQ_077 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7ZPQ_078 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_7ZPQ_079 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7ZPQ_080 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7ZPQ_081 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_7ZPQ_082 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | geometric IL_1DUQ_001 IL_25872.4 | |
| IL_7ZPQ_083 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7ZPQ_084 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7ZPQ_085 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_7ZPQ_086 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7ZPQ_087 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7ZPQ_088 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_7ZPQ_089 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7ZPQ_090 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_7ZPQ_245 | 1/2/1688:1690, 1/2/1711:1713 | No text annotation | ||
| IL_7ZPQ_092 | 1/2/1693:1695, 1/2/1706:1708 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_7ZPQ_093 | 1/3/13:19, 1/5/404:410 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7ZPQ_094 | 1/3/25:26, 1/5/337:339 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7ZPQ_095 | 1/3/44:64, 1/3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7ZPQ_096 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7ZPQ_097 | 1/3/68:69, 1/3/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7ZPQ_098 | 1/3/144:145, 1/5/13:15 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_7ZPQ_099 | 1/3/150:152, 1/5/7:8 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_7ZPQ_100 | 1/4/15:16, 1/4/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7ZPQ_101 | 1/4/21:27, 1/4/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7ZPQ_102 | 1/4/28:29, 1/4/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_7ZPQ_103 | 1/4/29:30, 1/4/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_7ZPQ_104 | 1/4/32:36, 1/4/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_7ZPQ_105 | 1/4/72:80, 1/4/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7ZPQ_106 | 1/4/84:87, 1/4/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7ZPQ_107 | 1/5/27:28, 1/5/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7ZPQ_108 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_7ZPQ_109 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7ZPQ_110 | 1/5/123:124, 1/5/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7ZPQ_111 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7ZPQ_246 | 1/5/163:165, 1/5/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_7ZPQ_247 | 1/5/169:170, 1/5/248:253 | No text annotation | geometric IL_5TBW_010 NA | |
| IL_7ZPQ_114 | 1/5/177:178, 1/5/238:241 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_7ZPQ_115 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7ZPQ_116 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7ZPQ_117 | 1/5/429:431, 1/5/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7ZPQ_119 | 1/5/512:513, 1/5/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_7ZPQ_120 | 1/5/517:525, 1/5/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7ZPQ_121 | 1/5/531:538, 1/5/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7ZPQ_122 | 1/5/668:670, 1/5/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7ZPQ_123 | 1/5/680:684, 1/5/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7ZPQ_124 | 1/5/725:728, 1/5/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7ZPQ_125 | 1/5/752:753, 1/5/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7ZPQ_126 | 1/5/755:756, 1/5/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7ZPQ_127 | 1/5/758:763, 1/5/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_7ZPQ_128 | 1/5/803:805, 1/5/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7ZPQ_129 | 1/5/805:809, 1/5/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7ZPQ_130 | 1/5/833:834, 1/5/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_7ZPQ_131 | 1/5/834:838, 1/5/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7ZPQ_132 | 1/5/869:872, 1/5/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7ZPQ_133 | 1/5/873:875, 1/5/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7ZPQ_134 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7ZPQ_135 | 1/5/954:956, 1/5/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7ZPQ_136 | 1/5/969:970, 1/5/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7ZPQ_137 | 1/5/977:982, 1/5/1101:1104 | No text annotation | ||
| IL_7ZPQ_138 | 1/5/983:985, 1/5/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_7ZPQ_139 | 1/5/991:997, 1/5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_7ZPQ_140 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_7ZPQ_141 | 1/5/999:1004, 1/5/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7ZPQ_142 | 1/5/1006:1009, 1/5/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_7ZPQ_143 | 1/5/1009:1011, 1/5/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7ZPQ_144 | 1/5/1013:1018, 1/5/1034:1037 | Other IL | homologous IL_5TBW_043 NA | |
| IL_7ZPQ_145 | 1/5/1069:1071, 1/5/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7ZPQ_146 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_7ZPQ_147 | 1/5/1120:1122, 1/5/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7ZPQ_149 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7ZPQ_150 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_7ZPQ_151 | 1/5/1180:1182, 1/5/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_7ZPQ_152 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7ZPQ_153 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7ZPQ_154 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7ZPQ_253 | 1/5/1218:1227, 1/5/1282:1287 | No text annotation | ||
| IL_7ZPQ_156 | 1/5/1228:1230, 1/5/1280:1281 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7ZPQ_248 | 1/5/1234:1238, 1/5/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_7ZPQ_158 | 1/5/1376:1378, 1/5/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7ZPQ_159 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7ZPQ_160 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7ZPQ_161 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7ZPQ_162 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7ZPQ_249 | 1/5/1501:1505, 1/5/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7ZPQ_164 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7ZPQ_165 | 1/5/1561:1563, 1/5/1577:1578 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_7ZPQ_166 | 1/5/1563:1566, 1/5/1572:1577 | No text annotation | ||
| IL_7ZPQ_167 | 1/5/1618:1621, 1/5/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7ZPQ_168 | 1/5/1623:1627, 1/5/1816:1822 | No text annotation | ||
| IL_7ZPQ_169 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_7ZPQ_170 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_7ZPQ_171 | 1/5/1661:1663, 1/5/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7ZPQ_172 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7ZPQ_173 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7ZPQ_174 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7ZPQ_175 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7ZPQ_176 | 1/5/1711:1717, 1/5/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7ZPQ_177 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7ZPQ_178 | 1/5/1895:1897, 1/5/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7ZPQ_179 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7ZPQ_250 | 1/5/1898:1906, 1/5/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7ZPQ_180 | 1/5/1901:1906, 1/5/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7ZPQ_181 | 1/5/1918:1923, 1/5/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7ZPQ_182 | 1/5/1940:1942, 1/5/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7ZPQ_183 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7ZPQ_184 | 1/5/2128:2129, 1/5/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7ZPQ_185 | 1/5/2156:2161, 1/5/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7ZPQ_186 | 1/5/2196:2199, 1/5/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7ZPQ_187 | 1/5/2200:2201, 1/5/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7ZPQ_188 | 1/5/2204:2210, 1/5/2235:2238 | No text annotation | ||
| IL_7ZPQ_189 | 1/5/2211:2217, 1/5/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7ZPQ_190 | 1/5/2276:2277, 1/5/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7ZPQ_191 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_7ZPQ_192 | 1/5/2391:2394, 1/5/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7ZPQ_193 | 1/5/2396:2398, 1/5/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_7ZPQ_194 | 1/5/2409:2411, 1/5/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7ZPQ_195 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7ZPQ_196 | 1/5/2423:2425, 1/5/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7ZPQ_197 | 1/5/2444:2447, 1/5/2499:2503 | No text annotation | ||
| IL_7ZPQ_198 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7ZPQ_199 | 1/5/2614:2615, 1/5/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7ZPQ_200 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_7ZPQ_201 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7ZPQ_202 | 1/5/2770:2773, 1/5/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_7ZPQ_203 | 1/5/2823:2824, 1/5/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7ZPQ_251 | 1/5/2823:2826, 1/5/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7ZPQ_204 | 1/5/2824:2826, 1/5/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7ZPQ_205 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_7ZPQ_206 | 1/5/2828:2830, 1/5/2858:2862 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7ZPQ_207 | 1/5/2835:2839, 1/5/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_7ZPQ_208 | 1/5/2876:2877, 1/5/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7ZPQ_209 | 1/5/2879:2881, 1/5/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7ZPQ_210 | 1/5/2881:2882, 1/5/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7ZPQ_211 | 1/5/2889:2891, 1/5/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7ZPQ_252 | 1/5/2889:2892, 1/5/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_7ZPQ_212 | 1/5/2891:2892, 1/5/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_7ZPQ_213 | 1/5/2918:2920, 1/5/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7ZPQ_214 | 1/5/2960:2961, 1/5/2970:2972 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_7ZPQ_215 | 1/5/3004:3007, 1/5/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_7ZPQ_216 | 1/5/3012:3014, 1/5/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7ZPQ_217 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7ZPQ_218 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7ZPQ_219 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7ZPQ_220 | 1/5/3063:3064, 1/5/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7ZPQ_221 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7ZPQ_222 | 1/5/3164:3166, 1/5/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7ZPQ_223 | 1/5/3168:3170, 1/5/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7ZPQ_224 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7ZPQ_225 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7ZPQ_226 | 1/5/3193:3194, 1/5/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_7ZPQ_227 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7ZPQ_228 | 1/5/3233:3235, 1/5/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7ZPQ_229 | 1/5/3235:3238, 1/5/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_7ZPQ_230 | 1/5/3300:3303, 1/5/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7ZPQ_231 | 1/5/3318:3320, 1/5/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_7ZPQ_232 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_7ZPQ_233 | 1/5/3328:3330, 1/5/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7ZPQ_234 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7ZPQ_235 | 1/5/3340:3342, 1/5/3363:3364 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
| IL_7ZPQ_236 | 1/5/3342:3345, 1/5/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7ZPQ_237 | 1/5/3349:3350, 1/5/3353:3356 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZPQ_238 | Isolated cWH basepair | ||
| IL_7ZPQ_044 | Tandem non-canonical cWW pairs | ||
| IL_7ZPQ_045 | Tandem non-canonical cWW pairs | ||
| IL_7ZPQ_244 | No text annotation | ||
| IL_7ZPQ_091 | No text annotation | ||
| IL_7ZPQ_112 | Other IL | ||
| IL_7ZPQ_113 | No text annotation | ||
| IL_7ZPQ_118 | No text annotation | ||
| IL_7ZPQ_148 | No text annotation | ||
| IL_7ZPQ_155 | No text annotation | ||
| IL_7ZPQ_157 | No text annotation | ||
| IL_7ZPQ_163 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZPQ_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7ZPQ_031 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_7ZPQ_032 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_7ZPQ_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7ZPQ_033 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7ZPQ_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7ZPQ_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7ZPQ_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7ZPQ_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7ZPQ_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7ZPQ_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7ZPQ_009 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_7ZPQ_010 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_7ZPQ_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7ZPQ_012 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_7ZPQ_034 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_7ZPQ_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7ZPQ_014 | 1/3/19:20, 1/5/369:376, 1/5/403:404 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7ZPQ_035 | 1/3/19:20, 1/5/369:379, 1/5/390:404 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_7ZPQ_036 | 1/3/21:24, 1/5/340:356, 1/5/363:368 | No text annotation | geometric J3_8C3A_047 NA | |
| J3_7ZPQ_037 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_7ZPQ_015 | 1/4/9:14, 1/4/66:67, 1/4/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7ZPQ_016 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7ZPQ_038 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_7ZPQ_039 | 1/5/185:189, 1/5/205:214, 1/5/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_7ZPQ_017 | 1/5/502:503, 1/5/588:597, 1/5/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7ZPQ_018 | 1/5/814:820, 1/5/905:907, 1/5/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7ZPQ_019 | 1/5/828:831, 1/5/863:867, 1/5/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7ZPQ_020 | 1/5/986:987, 1/5/1062:1066, 1/5/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7ZPQ_021 | 1/5/1230:1232, 1/5/1256:1266, 1/5/1275:1280 | No text annotation | ||
| J3_7ZPQ_022 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7ZPQ_023 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7ZPQ_024 | 1/5/1526:1531, 1/5/1591:1595, 1/5/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7ZPQ_040 | 1/5/1537:1542, 1/5/1551:1561, 1/5/1578:1584 | No text annotation | ||
| J3_7ZPQ_025 | 1/5/1631:1632, 1/5/1641:1645, 1/5/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7ZPQ_041 | 1/5/1654:1658, 1/5/1791:1792, 1/5/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7ZPQ_026 | 1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_7ZPQ_027 | 1/5/2529:2532, 1/5/2547:2563, 1/5/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7ZPQ_042 | 1/5/2651:2653, 1/5/2754:2765, 1/5/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7ZPQ_028 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7ZPQ_029 | 1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7ZPQ_043 | 1/5/3171:3176, 1/5/3212:3220, 1/5/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7ZPQ_030 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J4_7ZPQ_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7ZPQ_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7ZPQ_003 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7ZPQ_004 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_7ZPQ_005 | 1/5/1451:1457, 1/5/1475:1476, 1/5/1877:1880, 1/5/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_7ZPQ_006 | 1/5/1492:1496, 1/5/1520:1525, 1/5/1614:1615, 1/5/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_7ZPQ_007 | 1/5/1674:1675, 1/5/1693:1694, 1/5/1752:1753, 1/5/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7ZPQ_008 | 1/5/2130:2134, 1/5/2146:2150, 1/5/2186:2190, 1/5/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7ZPQ_009 | 1/5/2192:2194, 1/5/2248:2249, 1/5/2267:2276, 1/5/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7ZPQ_010 | 1/5/2654:2658, 1/5/2712:2716, 1/5/2740:2742, 1/5/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_7ZPQ_011 | 1/5/3010:3012, 1/5/3042:3043, 1/5/3098:3100, 1/5/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_7ZPQ_012 | 1/6/7:10, 1/6/25:27, 1/6/43:49, 1/6/65:66 | No text annotation | homologous J4_6CFJ_015 J4_70449.29 | |
| J5_7ZPQ_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7ZPQ_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7ZPQ_003 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_7ZPQ_004 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_7ZPQ_012 | 1/2/636:641, 1/2/693:700, 1/2/738:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_7ZPQ_006 | 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139, 1/5/20:22 | No text annotation | ||
| J5_7ZPQ_007 | 1/5/658:663, 1/5/799:802, 1/5/941:944, 1/5/1375:1376, 1/5/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7ZPQ_008 | 1/5/675:678, 1/5/702:706, 1/5/713:721, 1/5/749:751, 1/5/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_7ZPQ_009 | 1/5/1906:1914, 1/5/1938:1939, 1/5/2109:2110, 1/5/2114:2122, 1/5/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_7ZPQ_010 | 1/5/2399:2406, 1/5/2815:2823, 1/5/2867:2876, 1/5/2951:2957, 1/5/2975:2980 | No text annotation | ||
| J5_7ZPQ_011 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2651, 1/5/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_7ZPQ_001 | 1/3/32:35, 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331 | No text annotation | ||
| J6_7ZPQ_002 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2653, 1/5/2754:2765, 1/5/2793:2804 | No text annotation | ||
| J7_7ZPQ_001 | 1/5/949:954, 1/5/967:968, 1/5/1114:1117, 1/5/1141:1146, 1/5/1157:1161, 1/5/1338:1339, 1/5/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_7ZPQ_005 | No text annotation |
Coloring options: