HL_7ZPQ_018

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7ZPQ|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_018 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0994

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7ZPQ|1|2|U|764
7ZPQ|1|2|G|765
7ZPQ|1|2|U|766
7ZPQ|1|2|U|767
7ZPQ|1|2|C|768
7ZPQ|1|2|A|769
7ZPQ|1|2|A|770
7ZPQ|1|2|A|771
7ZPQ|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A