HL_7ZPQ_019

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

7ZPQ|1|2|U|779, 7ZPQ|1|2|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_019 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.3992

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7ZPQ|1|2|C|777
7ZPQ|1|2|G|778
7ZPQ|1|2|U|779
7ZPQ|1|2|A|780
7ZPQ|1|2|U|781
7ZPQ|1|2|U|782
7ZPQ|1|2|G|783

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A