HL_7ZPQ_031

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_031 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.586

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

7ZPQ|1|2|C|1359
7ZPQ|1|2|A|1360
7ZPQ|1|2|U|1361
7ZPQ|1|2|U|1362
7ZPQ|1|2|U|1363
7ZPQ|1|2|G|1364

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

Rps5p

Chain AQ

40S ribosomal protein S16-A

Chain AT

40S ribosomal protein S19-A