HL_7ZPQ_047

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_047 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0845

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZPQ|1|5|U|194
7ZPQ|1|5|U|195
7ZPQ|1|5|G|196
7ZPQ|1|5|G|197
7ZPQ|1|5|A|198
7ZPQ|1|5|A|199
7ZPQ|1|5|C|200
7ZPQ|1|5|A|201

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BC

RPL4A isoform 1

Chain BX

60S ribosomal protein L26-A

Chain Bd

RPL32 isoform 1